------- SECIS element -- id:1 -- grade:A ---- Chromosome = CM007960.1:subseq_35216640,104355_ Strand = - Positions = 51147 - 51066 Found by: Infernal (score=23.5) Covels (score=31.74) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -7.96 ..(((((((.......(((((((((((((((.................))))))))))))))).............))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc ...((((((.--....{[[{(((({{(((((.................)))))}}))))}]]}.........-...))))))... target ACGACAGUUU--CUAAUGAUGCUAUUCCUGUAAAUGGCACCUGUGCCAGUGGGUUUGGCUGAUGACUUUCAG-UGUAACUGUGUG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = CM007960.1:subseq_35216640,104355_ Strand = - Positions = 87637 - 87562 Found by: Infernal (score=13.64) Covels (score=12.04) Stem2 length = 11 Apical loop length = 12 Insertion in stem2 = 0, 0 Free Energy = -6.54 ..(((((((..........(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((({((..........([[{(([(({((((((....-........))))))}))]))}]])..--.--.))})))).. target GCUGAUCAACCAAUCACUAUGAAGGAAUCGUCCAUAACC-AAUGGUCCAUGGAUUAUGCCAGAGGA--C--AUUCAUUACU **** ^^ ****